• Getting rid of one warning in export()
  • Replacing epsg:4326 by +proj=longlat +datum=WGS84 +no_defs to potentially avoid bugs when plotting maps (problem ultimately related to latest version of gdal and proj)
  • Minor corrections
    • Removing unnecessary prints
    • Improved documentation
  • Removing some unnecessary debugging prints
  • Adapting the crestr reference
  • Adding a check on the column names of PSE
  • Fastening the LOO function
  • Adding a sorting parameter to the LOO() function
  • Adding the pdf_ranges() function.
  • Adding the plot.scatterPDFs() graphical output.
  • Adding taxonComposition() to get the size distribution of the composing species.
  • Minor bugs fixed
    • If no distributions are extracted, the calibration could be used.
    • combinedPDFs() could bug if only one variable
    • Filters by elevation added to getClimateSpace()
    • print(ntaxa) was 1 off
    • Minor naming issues with export()
    • plot_climateSpace() and plot_taxaCharacteristics() were issuing a warning when no climate values are available and add_modern is TRUE (coordinates are available but no climate)
  • Fixing minor bugs, including:
    • If the climate field didn’t match the column names of selectedTaxa, some functions were crashing (at least plot_climateSpace) because no distribution data were extracted.
    • Checks to ensure the column names of climate_space and distributions are correct for crest.set_modern_data()
    • Check to ensure the selectedTaxa has default values for all selected variables.
  • Replaced class(dat) == ‘RasterLayer’ by inherits(dat, ‘RasterLayer’)

  • Improved documentation

  • Minor bugs fixed on the plots

    • Title of the LOO plot adapted from ‘variable name [unit]’ to ‘Leave-one-out anomalies forname [unit]’
    • Title of stratigraphic diagrams can spread across many lines now
    • The thickness of the lines on the samplePDFs plot has been revised to show a greater range.
    • Labels added to the y-axes on the histograms of the climate space plot.
    • Labels added to the y-axis of the histograms and pdf plots of the taxaCharacteristics figure.
    • Adding caption on LOO diagram (+ and - anomalies)
    • Fixing title problem on plot_diagram()
    • Adding a colouring option for hiatus(es) on plot.crestObj()
    • Fixed problem of opening empty plotting windows when exporting the figures to files
    • Changing default value for bar_width in plot_loo() and plot_diagram()
  • Replacing the parameter fullPosterior by fullUncertainties in export().

  • Typos in the documentation have been fixed.

  • The text of the vignettes was updated to reflect changes in the manuscript. Nothing really significant.

  • Fixing bug related to ai.sqrt in crest.get_modern_data(). Only the climate space data were transformed.

  • Excluding all the distribution grid cells without any climate data.

  • Release of the first stable version of crestr
  • Added a NEWS.md file to track changes to the package.